BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008G04SP1|AL425918
(789 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig478 1544 0.0
>3x_Contig478
Length = 3300
Score = 1544 bits (779), Expect = 0.0
Identities = 784/786 (99%)
Strand = Plus / Plus
Query: 4 tcaggaacnattaagactactctgtaattagagaattggtttctttctataccgattttt 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 tcaggaacaattaagactactctgtaattagagaattggtttctttctataccgattttt 1948
Query: 64 tccatcgccaaagactgttctataagttgctcaacatcaaaaagaatttcttggaatgaa 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 tccatcgccaaagactgtactataagttgctcaacatcaaaaagaatttcttggaatgaa 2008
Query: 124 ttataattaggttcgttcaaattgaacgacccattgaggaaaggtgatcttaatttaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 ttataattaggttcgttcaaattgaacgacccattgaggaaaggtgatcttaatttaaaa 2068
Query: 184 tctgacggaagacactgggtggcatcgtgaccataatacgattttgatctgtctttaatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 tctgacggaagacactgggtggcatcgtgaccataatacgattttgatctgtctttaatc 2128
Query: 244 cattcaattcttccaaaatcatttaaatcgggcaccaactcagggtcagatttagcgttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2129 cattcaattcttccaaaatcatttaaatcgggcaccaactcagggtcagatttagcgttg 2188
Query: 304 aatgccgctgcttgttcagtggaatttggcatgattcttctcttataatatctcattctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2189 aatgccgctgcttgttcagtggaatttggcatgattcttctcttataatatctcattctc 2248
Query: 364 tctttgaagtcaaattggatatcatccttcaattgttgaaatatttcattgttagatata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2249 tctttgaagtcaaattggatatcatccttcaattgttgaaatatttcattgttagatata 2308
Query: 424 tcttcctgtggcgaaggaactgtaccaccatgagtcggcacagcgaccaaattggggact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2309 tcttcctgtggcgaaggaactgtaccaccatgagtcggcacagcgaccaaattggggact 2368
Query: 484 tgttgcggaaatatgtcatagttcggaccaatcttgatgaatgaggacccaggatgaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 tgttgcggaaatatgtcatagttcggaccaatcttgatgaatgaggacccaggatgaata 2428
Query: 544 atgatggaatcaagttcatcatcttctattgcattggaatcagccatgttatcatcatcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2429 atgatggaatcaagttcatcatcttctattgcattggaatcagccatgttatcatcatcc 2488
Query: 604 aatgctggcgtcccaattccggcagcgggagcagaacttgagccacctgtttggccttgt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2489 aatgctggcgtcccaattccggcagcgggagcagaacttgagccacctgtttggccttgt 2548
Query: 664 tgtctcaaatgtttcctttctctcatatagaagatctgatcatcgttcttcaaataattg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2549 tgtctcaaatgtttcctttctctcatatagaagatctgatcatcgttcttcaaataattg 2608
Query: 724 gaagaataattcttttggttgatgactgacaccggtttcaaagtaattggttgagcaata 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2609 gaagaataattcttttggttgatgactgacaccggtttcaaagtaattggttgagcaata 2668
Query: 784 tgttca 789
||||||
Sbjct: 2669 tgttca 2674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7560
Number of Sequences: 1807
Number of extensions: 7560
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 789
length of database: 10,358,551
effective HSP length: 16
effective length of query: 773
effective length of database: 10,329,639
effective search space: 7984810947
effective search space used: 7984810947
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)